Flatten the repo: move everything out of app/ to the root

Now that the CLI and the Next.js app are one package, nesting it inside
app/ served no purpose - the repo root itself becomes the published
npm package. Merges app/.gitignore and app/README.md into the root
versions, drops the now-duplicate app/LICENSE, and updates path
references (README, docs/ARCHITECTURE.md, docs/CONFIG_REFERENCE.md,
package.json's repository.directory) that assumed the app/ nesting.

Also fixes a real bug this surfaced: the in-app docs viewer resolved
docs/ relative to process.cwd(), which only worked by accident when the
CLI happened to be invoked from app/'s parent directory. A first attempt
at fixing it with import.meta.dirname broke instead, for the same
cross-module-graph reason config-path resolution already documented -
Next compiles Route Handlers through a separate module graph that
doesn't preserve source-relative import.meta paths. Fixed by exposing
the app root via TRIGGERSHELL_APP_ROOT (set once in server.ts, where
import.meta *does* resolve correctly), the same pattern already used
for TRIGGERSHELL_CONFIG_PATH.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

src/components/ui/checkbox.tsx

@@ -0,0 +1,28 @@
+"use client";
+
+import { Checkbox as CheckboxPrimitive } from "@base-ui/react/checkbox";
+
+import { cn } from "@/lib/utils";
+import { CheckIcon } from "lucide-react";
+
+function Checkbox({ className, ...props }: CheckboxPrimitive.Root.Props) {
+  return (
+    <CheckboxPrimitive.Root
+      data-slot="checkbox"
+      className={cn(
+        "peer relative flex size-4 shrink-0 items-center justify-center rounded-[4px] border border-input transition-colors outline-none group-has-disabled/field:opacity-50 after:absolute after:-inset-x-3 after:-inset-y-2 focus-visible:border-ring focus-visible:ring-3 focus-visible:ring-ring/50 disabled:cursor-not-allowed disabled:opacity-50 aria-invalid:border-destructive aria-invalid:ring-3 aria-invalid:ring-destructive/20 aria-invalid:aria-checked:border-primary dark:bg-input/30 dark:aria-invalid:border-destructive/50 dark:aria-invalid:ring-destructive/40 data-checked:border-primary data-checked:bg-primary data-checked:text-primary-foreground dark:data-checked:bg-primary",
+        className,
+      )}
+      {...props}
+    >
+      <CheckboxPrimitive.Indicator
+        data-slot="checkbox-indicator"
+        className="grid place-content-center text-current transition-none [&>svg]:size-3.5"
+      >
+        <CheckIcon />
+      </CheckboxPrimitive.Indicator>
+    </CheckboxPrimitive.Root>
+  );
+}
+
+export { Checkbox };