Flatten the repo: move everything out of app/ to the root

Now that the CLI and the Next.js app are one package, nesting it inside
app/ served no purpose - the repo root itself becomes the published
npm package. Merges app/.gitignore and app/README.md into the root
versions, drops the now-duplicate app/LICENSE, and updates path
references (README, docs/ARCHITECTURE.md, docs/CONFIG_REFERENCE.md,
package.json's repository.directory) that assumed the app/ nesting.

Also fixes a real bug this surfaced: the in-app docs viewer resolved
docs/ relative to process.cwd(), which only worked by accident when the
CLI happened to be invoked from app/'s parent directory. A first attempt
at fixing it with import.meta.dirname broke instead, for the same
cross-module-graph reason config-path resolution already documented -
Next compiles Route Handlers through a separate module graph that
doesn't preserve source-relative import.meta paths. Fixed by exposing
the app root via TRIGGERSHELL_APP_ROOT (set once in server.ts, where
import.meta *does* resolve correctly), the same pattern already used
for TRIGGERSHELL_CONFIG_PATH.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

.gitignore

@@ -1,3 +1,36 @@
+# dependencies
+/node_modules
+/.pnp
+.pnp.*
+.yarn/*
+!.yarn/patches
+!.yarn/plugins
+!.yarn/releases
+!.yarn/versions
+
+# testing
+/coverage
+
+# next.js
+/.next/
+/out/
+
+# production
+/build
+
+# typescript
+*.tsbuildinfo
+next-env.d.ts
+
+# debug
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+.pnpm-debug.log*
+
+# vercel
+.vercel
+
 # Runtime data (created by `triggershell start` in whatever directory the config lives in)
 .triggershell/
 
@@ -11,5 +44,6 @@
 
 # Editors / OS
 .DS_Store
+*.pem
 .idea/
 .vscode/