chore(rs): update dependencies (#1494)

### Chores
- Update cargo dependencies
- Remove unused cargo dependencies
- Fix clippy warnings
- Update Dockerfile (package.json requires node 22)
- Let Dependabot update bun, cargo, devcontainers, docker,
github-actions, npm (nix still not supported)

### TODO
- Upgrade dependencies with breaking changes

```shell
$ cargo update --verbose
   Unchanged crossterm v0.28.1 (available: v0.29.0)
   Unchanged schemars v0.8.22 (available: v1.0.4)
```

codex-rs/exec/src/event_processor.rs

@@ -415,7 +415,7 @@ impl EventProcessor {
                 {
                     (
                         format!(" in {}", format_elapsed(start_time)),
-                        format!("apply_patch(auto_approved={})", auto_approved),
+                        format!("apply_patch(auto_approved={auto_approved})"),
                     )
                 } else {
                     (String::new(), format!("apply_patch('{call_id}')"))