chore: refactor tool handling (#4510)

# Tool System Refactor

- Centralizes tool definitions and execution in `core/src/tools/*`:
specs (`spec.rs`), handlers (`handlers/*`), router (`router.rs`),
registry/dispatch (`registry.rs`), and shared context (`context.rs`).
One registry now builds the model-visible tool list and binds handlers.
- Router converts model responses to tool calls; Registry dispatches
with consistent telemetry via `codex-rs/otel` and unified error
handling. Function, Local Shell, MCP, and experimental `unified_exec`
all flow through this path; legacy shell aliases still work.
- Rationale: reduce per‑tool boilerplate, keep spec/handler in sync, and
make adding tools predictable and testable.

Example: `read_file`
- Spec: `core/src/tools/spec.rs` (see `create_read_file_tool`,
registered by `build_specs`).
- Handler: `core/src/tools/handlers/read_file.rs` (absolute `file_path`,
1‑indexed `offset`, `limit`, `L#: ` prefixes, safe truncation).
- E2E test: `core/tests/suite/read_file.rs` validates the tool returns
the requested lines.

## Next steps:
- Decompose `handle_container_exec_with_params` 
- Add parallel tool calls

codex-rs/core/tests/suite/read_file.rs

@@ -0,0 +1,124 @@
+#![cfg(not(target_os = "windows"))]
+
+use codex_core::protocol::AskForApproval;
+use codex_core::protocol::EventMsg;
+use codex_core::protocol::InputItem;
+use codex_core::protocol::Op;
+use codex_core::protocol::SandboxPolicy;
+use codex_protocol::config_types::ReasoningSummary;
+use core_test_support::responses;
+use core_test_support::responses::ev_assistant_message;
+use core_test_support::responses::ev_completed;
+use core_test_support::responses::ev_function_call;
+use core_test_support::responses::sse;
+use core_test_support::responses::start_mock_server;
+use core_test_support::skip_if_no_network;
+use core_test_support::test_codex::TestCodex;
+use core_test_support::test_codex::test_codex;
+use core_test_support::wait_for_event;
+use pretty_assertions::assert_eq;
+use serde_json::Value;
+use wiremock::matchers::any;
+
+#[tokio::test(flavor = "multi_thread", worker_threads = 2)]
+async fn read_file_tool_returns_requested_lines() -> anyhow::Result<()> {
+    skip_if_no_network!(Ok(()));
+
+    let server = start_mock_server().await;
+
+    let TestCodex {
+        codex,
+        cwd,
+        session_configured,
+        ..
+    } = test_codex().build(&server).await?;
+
+    let file_path = cwd.path().join("sample.txt");
+    std::fs::write(&file_path, "first\nsecond\nthird\nfourth\n")?;
+    let file_path = file_path.to_string_lossy().to_string();
+
+    let call_id = "read-file-call";
+    let arguments = serde_json::json!({
+        "file_path": file_path,
+        "offset": 2,
+        "limit": 2,
+    })
+    .to_string();
+
+    let first_response = sse(vec![
+        serde_json::json!({
+            "type": "response.created",
+            "response": {"id": "resp-1"}
+        }),
+        ev_function_call(call_id, "read_file", &arguments),
+        ev_completed("resp-1"),
+    ]);
+    responses::mount_sse_once_match(&server, any(), first_response).await;
+
+    let second_response = sse(vec![
+        ev_assistant_message("msg-1", "done"),
+        ev_completed("resp-2"),
+    ]);
+    responses::mount_sse_once_match(&server, any(), second_response).await;
+
+    let session_model = session_configured.model.clone();
+
+    codex
+        .submit(Op::UserTurn {
+            items: vec![InputItem::Text {
+                text: "please inspect sample.txt".into(),
+            }],
+            final_output_json_schema: None,
+            cwd: cwd.path().to_path_buf(),
+            approval_policy: AskForApproval::Never,
+            sandbox_policy: SandboxPolicy::DangerFullAccess,
+            model: session_model,
+            effort: None,
+            summary: ReasoningSummary::Auto,
+        })
+        .await?;
+
+    wait_for_event(&codex, |ev| matches!(ev, EventMsg::TaskComplete(_))).await;
+
+    let requests = server.received_requests().await.expect("recorded requests");
+    let request_bodies = requests
+        .iter()
+        .map(|req| req.body_json::<Value>().unwrap())
+        .collect::<Vec<_>>();
+    assert!(
+        !request_bodies.is_empty(),
+        "expected at least one request body"
+    );
+
+    let tool_output_item = request_bodies
+        .iter()
+        .find_map(|body| {
+            body.get("input")
+                .and_then(Value::as_array)
+                .and_then(|items| {
+                    items.iter().find(|item| {
+                        item.get("type").and_then(Value::as_str) == Some("function_call_output")
+                    })
+                })
+        })
+        .unwrap_or_else(|| {
+            panic!("function_call_output item not found in requests: {request_bodies:#?}")
+        });
+
+    assert_eq!(
+        tool_output_item.get("call_id").and_then(Value::as_str),
+        Some(call_id)
+    );
+
+    let output_text = tool_output_item
+        .get("output")
+        .and_then(|value| match value {
+            Value::String(text) => Some(text.as_str()),
+            Value::Object(obj) => obj.get("content").and_then(Value::as_str),
+            _ => None,
+        })
+        .expect("output text present");
+    assert_eq!(output_text, "L2: second\nL3: third");
+
+    Ok(())
+}